BANKSY
Neighborhood-augmented clustering that unifies cell typing and tissue-domain segmentation in spatial omics.
| Category | Spatial omics |
|---|---|
| GitHub | prabhakarlab/Banksy |
| First public | 2022-04-14 (source) |
| Paper | https://doi.org/10.1038/s41588-024-01664-3 · Nature Genetics (2024) |
| License | MIT for academic use; commercial restrictions |
| Pricing | Open source (non-commercial) |
| Tags | #clustering#spatial-domains |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | 10x Visium, Slide-seq, MERFISH, CosMx, CODEX |
|---|---|
| Resolution | — |
| Tasks | Cell typing + domain segmentation |
| GitHub stars | 167 |
| Interface | — |
Specs come from each project's README, paper or official page · BANKSY README · BANKSY paper. “—” means we couldn't verify it.
Compare with…
Pick 1–3 other Spatial omics tools to compare side by side with BANKSY.
Related
Maps single-cell profiles onto spatial data with deep learning.
Spatial omicsOpen source#mapping#deconvolution
Optimal-transport alignment and integration of spatial transcriptomics slices.
Spatial omicsOpen source#optimal-transport#alignment
Multi-omics single-cell optimal transport for space and time mapping.
Spatial omicsOpen source#optimal-transport#scverse