Squidpy
Spatial single-cell analysis toolkit in the scverse ecosystem.
| Category | Spatial omics |
|---|---|
| GitHub | scverse/squidpy |
| First public | 2022-01-31 (source) |
| Paper | https://www.nature.com/articles/s41592-021-01358-2 |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #python#neighborhood#image |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | Visium, Slide-seq, Xenium, others |
|---|---|
| Resolution | — |
| Tasks | Neighbor graphs, image features |
| GitHub stars | 608 |
| Interface | Package |
Specs come from each project's README, paper or official page · Squidpy README. “—” means we couldn't verify it.
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