CellCharter
Scalable identification and comparison of spatial cell niches across samples and technologies (scverse ecosystem).
| Category | Spatial omics |
|---|---|
| GitHub | CSOgroup/cellcharter |
| First public | 2023-01-10 (source) |
| Paper | https://doi.org/10.1038/s41588-023-01588-4 · Nature Genetics (2024) |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #niches#clustering#scverse |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | Spatial transcriptomics and proteomics (multi-sample) |
|---|---|
| Resolution | — |
| Tasks | Spatial niche identification |
| GitHub stars | 197 |
| Interface | — |
Specs come from each project's README, paper or official page · CellCharter README · CellCharter paper. “—” means we couldn't verify it.
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