SpaGCN
Graph convolutional network that combines gene expression, spatial location and histology to find spatial domains and spatially variable genes.
| Category | Spatial omics |
|---|---|
| GitHub | jianhuupenn/SpaGCN |
| First public | 2020-10-21 (source) |
| Paper | https://doi.org/10.1038/s41592-021-01255-8 · Nature Methods (2021) |
| License | MIT |
| Pricing | Open source |
| Tags | #spatial-transcriptomics#graph-convolutional-network#spatial-domains |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | Visium, ST, Slide-seq, MERFISH |
|---|---|
| Resolution | Spot / cell |
| Tasks | Spatial domains, spatially variable genes |
| GitHub stars | 265 |
| Interface | — |
Specs come from each project's README, paper or official page · SpaGCN README · SpaGCN paper. “—” means we couldn't verify it.
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