scGPT-spatial
scGPT continually pretrained on spatial transcriptomics for spatial-aware embeddings, deconvolution and imputation.
| Category | Spatial omics |
|---|---|
| GitHub | bowang-lab/scGPT-spatial |
| First public | 2025-02-05 (source) |
| Paper | https://doi.org/10.1101/2025.02.05.636714 · bioRxiv preprint (2025) |
| License | MIT |
| Pricing | Open source |
| Tags | #foundation-model#scgpt |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | Visium, Visium HD, Xenium, MERFISH |
|---|---|
| Resolution | — |
| Tasks | Foundation model (spatial transcriptomics) |
| GitHub stars | 143 |
| Interface | — |
Specs come from each project's README, paper or official page · scGPT-spatial README · scGPT-spatial paper. “—” means we couldn't verify it.
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