← Single-cell & foundation models
scFoundation
100M-parameter foundation model trained on 50M human single-cell transcriptomes.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | biomap-research/scFoundation |
| First public | 2024-06-06 (source) |
| Paper | https://www.nature.com/articles/s41592-024-02305-7 |
| License | Apache-2.0 (code); model weights under separate terms |
| Pricing | Open source |
| Tags | #foundation-model |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | 50M+ human cells |
|---|---|
| Architecture | xTrimoGene transformer, 100M params |
| Tasks | Embeddings, annotation, fine-tuning |
| Species | Human |
| GitHub stars | 434 |
| Interface | Docker |
Specs come from each project's README, paper or official page · scFoundation README. “—” means we couldn't verify it.
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