HEST
HEST-1k dataset of 1,276 paired spatial transcriptomics and H&E whole-slide samples, plus a library and benchmark for histology foundation models.
| Category | Spatial omics |
|---|---|
| GitHub | mahmoodlab/HEST |
| First public | 2024-03-04 (source) |
| Paper | https://arxiv.org/abs/2406.16192 · arXiv preprint (2024) |
| License | no license detected by GitHub |
| Pricing | Research release |
| Tags | #spatial-transcriptomics#computational-pathology#histology |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | Visium, Visium HD, Xenium, ST |
|---|---|
| Resolution | Spot / cell, paired H&E |
| Tasks | Dataset, gene expression prediction benchmark |
| GitHub stars | 445 |
| Interface | — |
Specs come from each project's README, paper or official page · HEST README · HEST paper. “—” means we couldn't verify it.
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