← Single-cell & foundation models
Scanpy
Scalable Python toolkit for single-cell gene expression analysis.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | scverse/scanpy |
| First public | 2017-08-09 (source) |
| Paper | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1382-0 |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #python#scverse#clustering |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | — |
|---|---|
| Architecture | — |
| Tasks | General analysis (>1M cells) |
| Species | — |
| GitHub stars | 2,590 |
| Interface | — |
Specs come from each project's README, paper or official page · Scanpy README. “—” means we couldn't verify it.
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