← Single-cell & foundation models
scGPT
Generative pretrained transformer foundation model for single-cell multi-omics.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | bowang-lab/scGPT |
| First public | 2023-05-01 (source) |
| Paper | https://www.nature.com/articles/s41592-024-02201-0 |
| License | MIT |
| Pricing | Open source |
| Tags | #foundation-model#transformer#annotation |
| Last checked | 2026-10-16 |
Compare with… scGPT vs Geneformer
Specs
| Pretraining corpus | 33M human cells (whole-human checkpoint) |
|---|---|
| Architecture | Generative transformer |
| Tasks | Annotation, integration, reference mapping, perturbation |
| Species | Human |
| GitHub stars | 1,654 |
| Interface | Package |
Specs come from each project's README, paper or official page · scGPT README. “—” means we couldn't verify it.
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