← Single-cell & foundation models
CellTypist
Automated cell type annotation with logistic regression models trained on curated atlases.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | Teichlab/celltypist |
| First public | 2021-04-28 (source) |
| Paper | https://www.science.org/doi/10.1126/science.abl5197 |
| License | MIT |
| Pricing | Open source |
| Tags | #annotation#immune |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | Trained on curated atlases incl. ~360k immune cells (16 tissues) |
|---|---|
| Architecture | Logistic regression |
| Tasks | Annotation |
| Species | Human |
| GitHub stars | 513 |
| Interface | Package, Docker, Colab |
Specs come from each project's README, paper or official page · CellTypist README · CellTypist paper. “—” means we couldn't verify it.
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