RCTD (spacexr)
Robust cell type decomposition for spatial transcriptomics.
| Category | Spatial omics |
|---|---|
| GitHub | dmcable/spacexr |
| First public | 2020-05-08 (source) |
| Paper | https://www.nature.com/articles/s41587-021-00830-w |
| License | GPL-3.0 |
| Pricing | Open source |
| Tags | #deconvolution#r |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | MERFISH, Slide-seq, Visium |
|---|---|
| Resolution | Spot / pixel (mixtures decomposed) |
| Tasks | Cell-type decomposition |
| GitHub stars | 489 |
| Interface | Package |
Specs come from each project's README, paper or official page · RCTD (spacexr) README · RCTD (spacexr) paper. “—” means we couldn't verify it.
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