← Spatial omics

moscot

Multi-omics single-cell optimal transport for space and time mapping.

Visit website ↗

CategorySpatial omics
GitHubtheislab/moscot
First public2023-05-11 (source)
Paperhttps://www.nature.com/articles/s41586-024-08453-2
LicenseBSD-3-Clause
PricingOpen source
Tags#optimal-transport#scverse
Last checked2026-10-16

Specs

Platforms supported—
ResolutionSingle cell
TasksSlide alignment, space/time mapping
GitHub stars217
InterfacePackage

Specs come from each project's README, paper or official page · moscot README · moscot paper. “—” means we couldn't verify it.

Compare with…

Pick 1–3 other Spatial omics tools to compare side by side with moscot.

Select 1–3 tools

Related

Tangram

Maps single-cell profiles onto spatial data with deep learning.

Spatial omicsOpen source#mapping#deconvolution

PASTE

Optimal-transport alignment and integration of spatial transcriptomics slices.

Spatial omicsOpen source#optimal-transport#alignment

Bayesian mapping of fine-grained cell types in spatial transcriptomics.

Spatial omicsOpen source#deconvolution#bayesian