← Single-cell & foundation models
Harmony
Fast, sensitive batch integration of single-cell data.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | immunogenomics/harmony |
| First public | 2018-11-04 (source) |
| Paper | https://www.nature.com/articles/s41592-019-0619-0 |
| License | GPL-3.0 |
| Pricing | Open source |
| Tags | #integration#batch |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | — |
|---|---|
| Architecture | Iterative embedding correction |
| Tasks | Batch integration (~10^6 cells on a PC); scRNA + spatial |
| Species | — |
| GitHub stars | 677 |
| Interface | Package |
Specs come from each project's README, paper or official page · Harmony README · Harmony paper. “—” means we couldn't verify it.
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