← Single-cell & foundation models
CytoVI
Deep generative model in scvi-tools that integrates flow cytometry, mass cytometry and CITE-seq data across panels, with protein imputation, differential expression and annotation.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | scverse/scvi-tools |
| First public | 2025-09-12 (source) |
| Paper | https://doi.org/10.1038/s41592-026-03224-5 · Nature Methods (2026) |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #cytometry#vae#integration |
| Last checked | 2026-10-17 |
Specs
| Pretraining corpus | — |
|---|---|
| Architecture | Probabilistic generative model (VAE) |
| Tasks | Cross-panel/technology integration, protein imputation, differential expression, annotation |
| Species | — |
| GitHub stars | 1,713 |
| Interface | Package (scvi-tools) |
Specs come from each project's README, paper or official page · CytoVI paper · CytoVI site. “—” means we couldn't verify it.
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