← Sequencing & variant calling
DeepVariant
Google deep learning variant caller for Illumina, PacBio HiFi and ONT data.
| Category | Sequencing & variant calling |
|---|---|
| GitHub | google/deepvariant |
| First public | 2016-12-14 (source) |
| Paper | https://www.nature.com/articles/nbt.4235 |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #variant-calling#long-read#short-read |
| Last checked | 2026-10-16 |
Specs
| Sequencing platform | Illumina, Element, PacBio, ONT R10.4.1 |
|---|---|
| Task | Variant calling |
| Variant types | Small variants (SNVs, indels) |
| GitHub stars | 3,822 |
| Interface | Docker |
Specs come from each project's README, paper or official page · DeepVariant README. “—” means we couldn't verify it.
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