← Sequencing & variant calling
DeepSomatic
Google's deep-learning somatic small-variant caller for tumor/normal data across Illumina, PacBio and Oxford Nanopore.
| Category | Sequencing & variant calling |
|---|---|
| GitHub | google/deepsomatic |
| First public | 2024-08-16 (source) |
| Paper | https://doi.org/10.1101/2024.08.16.608331 · bioRxiv preprint (2024) |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #variant-calling#somatic#cancer |
| Last checked | 2026-10-16 |
Specs
| Sequencing platform | Illumina, PacBio HiFi, Oxford Nanopore |
|---|---|
| Task | Somatic small-variant calling |
| Variant types | SNVs, small indels |
| GitHub stars | 325 |
| Interface | — |
Specs come from each project's README, paper or official page · DeepSomatic README · DeepSomatic paper. “—” means we couldn't verify it.
Compare with…
Pick 1–3 other Sequencing & variant calling tools to compare side by side with DeepSomatic.
Related
Google deep learning variant caller for Illumina, PacBio HiFi and ONT data.
Sequencing & variant callingOpen source#variant-calling#long-read
Oxford Nanopore's production basecaller: transformer/LSTM models turning raw nanopore signal into reads, with modified-base calling and duplex.
Sequencing & variant callingOpen source#basecalling#nanopore
Oxford Nanopore's research basecaller for training and testing new basecalling models.
Sequencing & variant callingOpen source#basecalling#nanopore