← Sequencing & variant calling
HitSV
Structural variant caller with haplotype-resolved local assembly that works on PacBio HiFi, ONT, hybrid and short-read data.
| Category | Sequencing & variant calling |
|---|---|
| GitHub | hitbc/HitSV |
| First public | 2026-02-20 (source) |
| Paper | https://www.nature.com/articles/s41587-026-03332-9 · Nature Biotechnology (2026) |
| License | GPL-3.0 |
| Pricing | Open source |
| Tags | #structural-variants#long-read#variant-calling |
| Last checked | 2026-10-16 |
Specs
| Sequencing platform | PacBio HiFi, ONT, Illumina, hybrid |
|---|---|
| Task | Structural variant calling and genotyping |
| Variant types | SVs |
| GitHub stars | 40 |
| Interface | — |
Specs come from each project's README, paper or official page · HitSV paper · HitSV README. “—” means we couldn't verify it.
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