← Sequencing & variant calling
SVPG
Pangenome-guided structural variant caller for long reads that can also add new samples to an existing pangenome graph.
| Category | Sequencing & variant calling |
|---|---|
| GitHub | coopsor/SVPG |
| First public | 2025-07-17 (source) |
| Paper | https://www.nature.com/articles/s41592-026-03219-2 · Nature Methods (2026) |
| License | MIT |
| Pricing | Open source |
| Tags | #structural-variants#pangenome#long-read |
| Last checked | 2026-10-16 |
Specs
| Sequencing platform | ONT, PacBio HiFi |
|---|---|
| Task | Pangenome-based SV calling and graph augmentation |
| Variant types | SVs |
| GitHub stars | 43 |
| Interface | — |
Specs come from each project's README, paper or official page · SVPG paper · SVPG README. “—” means we couldn't verify it.
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