← Single-cell & foundation models

scDblFinder

Doublet detection for single-cell data using gradient-boosted trees trained on artificial doublets.

Visit website ↗

CategorySingle-cell & foundation models
GitHubplger/scDblFinder
First public2019-05-05 (source)
Paperhttps://doi.org/10.12688/f1000research.73600.2 · F1000Research
LicenseGPL-3.0
PricingOpen source
Tags#single-cell#doublets
Last checked2026-10-16

Specs

Pretraining corpusPer-dataset (simulated doublets)
ArchitectureGradient boosting (xgboost)
TasksDoublet detection
SpeciesAny
GitHub stars274
Interface—

Specs come from each project's README, paper or official page · scDblFinder README · scDblFinder paper. “—” means we couldn't verify it.

Compare with…

Pick 1–3 other Single-cell & foundation models tools to compare side by side with scDblFinder.

Select 1–3 tools

Related

Seurat

R toolkit for single-cell genomics, integration and multimodal analysis.

Single-cell & foundation modelsOpen source#r#integration

Scanpy

Scalable Python toolkit for single-cell gene expression analysis.

Single-cell & foundation modelsOpen source#python#scverse

scvi-tools

Probabilistic deep generative models for single-cell omics (scVI, totalVI, scANVI...).

Single-cell & foundation modelsOpen source#vae#integration