← Single-cell & foundation models
scBasset
Sequence-based deep learning model for single-cell ATAC-seq representation and TF activity.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | calico/scBasset |
| First public | 2021-09-10 (source) |
| Paper | https://doi.org/10.1038/s41592-022-01562-8 |
| License | Apache-2.0 |
| Pricing | Open source |
| Tags | #scatac#epigenomics#embeddings |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | — |
|---|---|
| Architecture | Sequence CNN |
| Tasks | scATAC / multiome representation, TF activity |
| Species | — |
| GitHub stars | 103 |
| Interface | Package |
Specs come from each project's README, paper or official page · scBasset README · scBasset paper. “—” means we couldn't verify it.
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