← Single-cell & foundation models
ArchR
Scalable single-cell chromatin accessibility (scATAC-seq) analysis in R.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | GreenleafLab/ArchR |
| First public | 2020-04-29 (source) |
| Paper | https://www.nature.com/articles/s41588-021-00790-6 |
| License | MIT |
| Pricing | Open source |
| Tags | #atac#epigenomics |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | — |
|---|---|
| Architecture | — |
| Tasks | scATAC clustering, trajectories, peak-to-gene linkage (>1M cells on a laptop) |
| Species | — |
| GitHub stars | 467 |
| Interface | Package, Docker |
Specs come from each project's README, paper or official page · ArchR README · ArchR paper · ArchR site. “—” means we couldn't verify it.
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