Open Problems in Single-Cell
Living benchmarks for single-cell analysis tasks.
| Category | Datasets & benchmarks |
|---|---|
| GitHub | openproblems-bio/openproblems |
| First public | 2023-02-02 (source) |
| License | MIT |
| Pricing | Open source |
| Tags | #benchmark#single-cell |
| Last checked | 2026-10-16 |
Specs
| Size | 14 tasks, 140 methods, 127 datasets |
|---|---|
| Modality | Single-cell benchmarks |
| Access | Open |
| GitHub stars | 441 |
| Interface | — |
Specs come from each project's README, paper or official page · Open Problems in Single-Cell README · Open Problems in Single-Cell site. “—” means we couldn't verify it.
Compare with…
Pick 1–3 other Datasets & benchmarks tools to compare side by side with Open Problems in Single-Cell.
Related
Curated single-cell data portal and Census API with 100M+ cells.
Datasets & benchmarksOpen source#atlas#single-cell
Data portal of the Human Cell Atlas consortium.
Datasets & benchmarksOpen source#atlas
100M-cell single-cell drug perturbation atlas.
Datasets & benchmarksOpen source#perturbation#dataset