← Sequencing & variant calling
DeepPolisher
Transformer-based polisher that reduces base errors in PacBio HiFi genome assemblies.
| Category | Sequencing & variant calling |
|---|---|
| GitHub | google/deeppolisher |
| First public | 2024-09-17 (source) |
| Paper | https://doi.org/10.1101/gr.280149.124 · Genome Research (2025) |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #assembly#polishing#transformer |
| Last checked | 2026-10-16 |
Specs
| Sequencing platform | PacBio HiFi |
|---|---|
| Task | Assembly polishing |
| Variant types | — |
| GitHub stars | 111 |
| Interface | — |
Specs come from each project's README, paper or official page · DeepPolisher README · DeepPolisher paper. “—” means we couldn't verify it.
Compare with…
Pick 1–3 other Sequencing & variant calling tools to compare side by side with DeepPolisher.
Related
Google deep learning variant caller for Illumina, PacBio HiFi and ONT data.
Sequencing & variant callingOpen source#variant-calling#long-read
Oxford Nanopore's production basecaller: transformer/LSTM models turning raw nanopore signal into reads, with modified-base calling and duplex.
Sequencing & variant callingOpen source#basecalling#nanopore
Oxford Nanopore's research basecaller for training and testing new basecalling models.
Sequencing & variant callingOpen source#basecalling#nanopore