DeepCell
Van Valen lab deep learning library for cell segmentation (Mesmer) and tracking in 2D/3D biological images.
| Category | Imaging & pathology |
|---|---|
| GitHub | vanvalenlab/deepcell-tf |
| First public | 2018-05-16 (source) |
| Paper | https://doi.org/10.1038/s41587-021-01094-0 · Nature Biotechnology (2022) |
| License | Apache-2.0 |
| Pricing | Open source |
| Tags | #deep-learning#tensorflow#instance-segmentation |
| Last checked | 2026-10-16 |
Specs
| 2D / 3D | 2D, 3D, 2D time-lapse |
|---|---|
| Modality | Multiplexed tissue, live-cell fluorescence |
| Segmentation type | Whole-cell and nuclear instance segmentation, tracking |
| GitHub stars | 481 |
| Interface | — |
Specs come from each project's README, paper or official page · DeepCell README · DeepCell paper. “—” means we couldn't verify it.
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