CellProfiler
Image analysis software for high-throughput cell phenotyping.
| Category | Imaging & pathology |
|---|---|
| GitHub | CellProfiler/CellProfiler |
| License | BSD-3-Clause |
| Pricing | Open source |
| Tags | #high-content |
| Last checked | 2026-10-16 |
Specs
| 2D / 3D | — |
|---|---|
| Modality | Microscopy (high-throughput) |
| Segmentation type | Pipeline modules (object identification + measurement) |
| GitHub stars | 1,137 |
| Interface | — |
Specs come from each project's README, paper or official page · CellProfiler README · CellProfiler site. “—” means we couldn't verify it.
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