← Single-cell & foundation models
CellOracle
In silico gene perturbation via GRN inference from single-cell multi-omics.
| Category | Single-cell & foundation models |
|---|---|
| GitHub | morris-lab/CellOracle |
| First public | 2020-12-01 (source) |
| Paper | https://www.nature.com/articles/s41586-022-05688-9 |
| License | Apache-2.0 |
| Pricing | Open source |
| Tags | #grn#perturbation |
| Last checked | 2026-10-16 |
Specs
| Pretraining corpus | Uses unperturbed wild-type multi-omics data |
|---|---|
| Architecture | GRN models |
| Tasks | In silico perturbation |
| Species | Human, mouse, yeast, zebrafish, Xenopus, rat, … |
| GitHub stars | 505 |
| Interface | Docker |
Specs come from each project's README, paper or official page · CellOracle README · CellOracle paper. “—” means we couldn't verify it.
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