Cellist
Scalable cell segmentation for subcellular-resolution spatial transcriptomics that combines staining images with transcript signals across platforms.
| Category | Spatial omics |
|---|---|
| GitHub | wanglabtongji/Cellist |
| First public | 2024-05-30 (source) |
| Paper | https://www.nature.com/articles/s41588-026-02610-1 · Nature Genetics (2026) |
| License | GPL-3.0 |
| Pricing | Open source |
| Tags | #segmentation#stereo-seq#xenium |
| Last checked | 2026-10-16 |
Specs
| Platforms supported | Stereo-seq, Seq-Scope, Xenium and others |
|---|---|
| Resolution | Subcellular |
| Tasks | Cell segmentation |
| GitHub stars | 17 |
| Interface | — |
Specs come from each project's README, paper or official page · Cellist paper · Cellist README. “—” means we couldn't verify it.
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