AlphaPeptDeep
Deep learning framework predicting peptide MS2 spectra, retention time and CCS for proteomics.
| Category | Proteomics & metabolomics |
|---|---|
| GitHub | MannLabs/alphapeptdeep |
| First public | 2022-06-28 (source) |
| Paper | https://doi.org/10.1038/s41467-022-34904-3 |
| License | Apache-2.0 |
| Pricing | Open source |
| Tags | #mass-spec#spectrum-prediction#peptides |
| Last checked | 2026-10-16 |
Specs
| Acquisition (DDA / DIA) | — |
|---|---|
| Task | Predict RT, CCS, MS2 spectra (+ HLA presentation) |
| Input | Peptide sequence |
| GitHub stars | 160 |
| Interface | Package, Docker, Web |
Specs come from each project's README, paper or official page · AlphaPeptDeep README · AlphaPeptDeep paper. “—” means we couldn't verify it.
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