← Protein structure & design

ProteinMPNN

Deep-learning inverse folding: designs sequences for given backbones.

Visit website ↗

CategoryProtein structure & design
GitHubdauparas/ProteinMPNN
First public2022-06-04 (source)
Paperhttps://www.science.org/doi/10.1126/science.add2187
LicenseMIT
PricingOpen source
Tags#inverse-folding#design
Last checked2026-10-16

Specs

TaskInverse folding (sequence design)
ModalitiesProtein, single or multiple chains
MSA required—
Open weightsYes (in repo)
GPU need—
GitHub stars1,879
InterfacePackage

Specs come from each project's README, paper or official page · ProteinMPNN README · ProteinMPNN paper. “—” means we couldn't verify it.

Compare with…

Pick 1–3 other Protein structure & design tools to compare side by side with ProteinMPNN.

Select 1–3 tools

Related

Structure prediction of proteins, nucleic acids, ligands and their complexes; free web server and code, weights on request for non-commercial use.

Protein structure & designFree (research)#structure#complexes

200M+ predicted protein structures from DeepMind and EMBL-EBI.

Protein structure & designOpen source#database#structure

RFdiffusion

Diffusion model for de novo protein backbone design and binder design.

Protein structure & designOpen source#design#diffusion