Nucleotide Transformer v3 (NTv3)
Multi-species DNA foundation model with 1 Mb single-base context; predicts ~16k functional tracks, annotates genomes, and designs enhancers.
| Category | Genomics & DNA models |
|---|---|
| GitHub | instadeepai/nucleotide-transformer |
| First public | 2025-12-25 (source) |
| Paper | https://doi.org/10.64898/2025.12.22.695963 |
| License | CC-BY-NC-SA-4.0 |
| Pricing | Open source (non-commercial) |
| Tags | #dna-language-model#long-context#sequence-design |
| Last checked | 2026-10-16 |
Specs
| Input length / context | 1 Mb |
|---|---|
| Resolution | Single base |
| Species | 24 animal & plant species (post-training) |
| Tasks | Functional tracks, annotation, enhancer design |
| GitHub stars | — |
| Interface | — |
Specs come from each project's README, paper or official page · Nucleotide Transformer v3 (NTv3) paper · Nucleotide Transformer v3 (NTv3) README · Nucleotide Transformer v3 (NTv3) source 3. “—” means we couldn't verify it.
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